FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3108269
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT300114696.55361231605116No Hit
GCGCCCCT266290.856714782407829No Hit
GCGCACCA227430.7316934280784578No Hit
GCGCACAT67990.21873911170493932No Hit
CCGCACCT60330.19409517001263404No Hit
GCCCACCT52050.16745654896664347No Hit
GCGCACCG49430.15902742008494117No Hit
GCGAACCT43620.14033534420605168No Hit
GCGCAACT39490.1270482059306965No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)