FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3308223
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT325432098.37063583682236No Hit
AAGTTGAA128430.38821445833609164No Hit
AAGTAGAT43070.13019073986245788No Hit
AAGATGAT42070.12716796902748093No Hit
AAGTTGCT36610.1106636402685067No Hit
AAGTTCAT35320.10676426589138639No Hit
AATTTGAT34970.10570629609914448No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)