FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3108269
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT83140.2674800668796684No Hit
GGGGGGGGGGGGGGGG78840.25364600039443175No Hit
TCGCGGTGAGTCTTGA70290.2261387286621589No Hit
GTTAAGAGAGTACGTT62900.20236343765613593No Hit
TACCAGTGATACGATC52980.1704485679971714No Hit
TTGTGGTGAAAGACAT52390.1685504053864064No Hit
ATCTTACTGGTTTGGT50920.16382108498331388No Hit
CGCTTACTGATCACAC50810.16346719025927292No Hit
ATAGATGGAGAGTAAT49750.1600569320094239No Hit
ATTCCTAACTGCGTGC49470.1591561090755015No Hit
ATATGCCGAGAACAGC46960.1510808749178401No Hit
TGGAACACTTGAGGCA44160.14207264557861626No Hit
GCTATACGACAGGTGA43360.13949886576740944No Hit
CTTTCTGCTCTTGTGA41470.13341831096343335No Hit
AGCTCTGCTGGCCTGT40000.12868899056034083No Hit
CTTGACGCTCAGGGTA39760.12791685661697877No Hit
ACTGGAACTCTGGAAG39310.12646910547317494No Hit
AGGTAGCGATTGACCA38050.1224154022705242No Hit
TGTGACTGACCGTTAA37160.11955207223055664No Hit
TGTACCCTGCTGAGAG34970.11250634999737795No Hit
AGTTCACGACCAGAGA34880.1122167997686172No Hit
ACCCTTTCTAGGTGAC34240.11015777591965173No Hit
TCCCAGACTCCTAACA33360.10732661812732425No Hit
GCGGTTCGAAGCAAGC33300.10713358464148375No Hit
TTCCAAACTCCGCTAG33220.10687620666036306No Hit
ACATGTGTGTCAATGC32990.1061362449646411No Hit
ACACTCCACCGTACAT32410.10427025460151615No Hit
TCAGTCCACCCAGCAC31900.10262946997187179No Hit
CACAGCTCTCTCTGGG31370.10092434084694728No Hit
CAGTGGAGAGATCATC31130.10015220690358524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)