FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3531959
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA98390.2785706176090945No Hit
GGACACCTGGCTCCTT97860.2770700339386726No Hit
GGGGGGGGGGGGGGGG90460.25611848835164847No Hit
GTTAAGAGAGTACGTT67240.19037593584749993No Hit
CGCTTACTGATCACAC59050.1671876712045638No Hit
ATCTTACTGGTTTGGT56670.16044920113738578No Hit
TTGTGGTGAAAGACAT55610.15744803379654182No Hit
TACCAGTGATACGATC54540.1544185535562559No Hit
ATAGATGGAGAGTAAT53810.15235171189699542No Hit
ATTCCTAACTGCGTGC52840.14960536065112873No Hit
ATATGCCGAGAACAGC50840.14394278076274386No Hit
GCGGTTCGAAGCAAGC48050.13604348181844694No Hit
TGGAACACTTGAGGCA46650.13207967589657751No Hit
CTTGACGCTCAGGGTA45650.12924838595238505No Hit
CTTTCTGCTCTTGTGA44970.1273231087903342No Hit
GCTATACGACAGGTGA44270.12534120582939948No Hit
AGGTAGCGATTGACCA43530.12324605127069707No Hit
AGCTCTGCTGGCCTGT42450.12018825813096924No Hit
ACTGGAACTCTGGAAG42000.11891417765608264No Hit
TGTGACTGACCGTTAA40080.11347810096323314No Hit
ACGCTCTTGCCTCAAA39930.11305340747160429No Hit
TGTACCCTGCTGAGAG38140.10798539847149981No Hit
AGTTCACGACCAGAGA37970.10750407918098709No Hit
TTCCAAACTCCGCTAG36790.10416315704684001No Hit
ACCCTTTCTAGGTGAC36540.1034553345607919No Hit
ACATGTGTGTCAATGC35940.10175656059427643No Hit
ACACTCCACCGTACAT35490.10048248011938984No Hit
TCAGTCCACCCAGCAC35430.10031260272273829No Hit
CACAGCTCTCTCTGGG35360.1001144124266448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)