FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3531959
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG342263996.90483383300882No Hit
CTATTTGA252230.7141362626236601No Hit
CGATTTGG108060.3059491913694355No Hit
CTTTTTGG71330.20195591171924704No Hit
CAATTTGG63280.17916402766849784No Hit
CTATTTGC62420.17672911831649235No Hit
CTAATTGG61570.17432252186392877No Hit
CTATATGG59790.1692828257632662No Hit
CTATTTTG58470.1655455230369322No Hit
CTAGTTGG53730.15212520870146No Hit
GTATTTGG50590.14323495827669575No Hit
CTATTTCG49050.13887477176263938No Hit
ATATTTGG44780.12678516370093765No Hit
CTATTAGG42300.11976356463934038No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)