FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004950192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17283666
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT1693063597.95742986470579No Hit
AGCTGCGA552950.31992633970131107No Hit
CGCTGCGT391060.22625986871072376No Hit
AGCAGCGT380610.22021369771899088No Hit
AGCTGCGG260940.1509749146969167No Hit
AGCGGCGT204420.11827351905550593No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)