FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1723509
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT361532.09763917681892No Hit
AAATAGGTGTTGCGTA143280.8313272515548222No Hit
TATCACTACTGGTCCG124750.723814032882915No Hit
ATGGGTTACCATGCGC119090.6909740535152413No Hit
GGCTTGCGACGACATT88300.5123268866016946No Hit
GTGTTGTGAGGGTAGT81630.47362676957300487No Hit
CTAATCTTGCCACTTC77090.4472851606809132No Hit
CTGCTTTCTCCACTTC71560.4151994564577267No Hit
AGAGAATTGCCTCCTA66280.38456428135855397No Hit
CTGGCCAGAGGAATGC51550.29909910537165746No Hit
AGCCGAGCTGCCCTTT49470.28703070305986217No Hit
AATGGTGCTTCGTACA46750.27124894619059137No Hit
GGGGGGGGGGGGGGGG45000.26109524232249437No Hit
GCTCCTAACCTATCTT41240.23927928429732598No Hit
TCCCTGTGACCCGCAA40380.23428946411071833No Hit
GAGAGAAGACTCACGG38110.22111865966467245No Hit
TGCCGTTACAATCTGC35380.20527888163044114No Hit
CTTAATCTGGGAATTA33440.1940227756280936No Hit
TTGTCAACTAATACAG32960.191237759709987No Hit
GCTGTTCTGATAGGTA32930.19106369621510536No Hit
TCTTTCCACCGAGTGA32530.1887428496166832No Hit
GTAATCGTGATCCTCC32120.18636398185330044No Hit
TAGCGCGACAAGACAT31030.18003967487260003No Hit
TCGTATACTTTCTGGA30740.17835706108874394No Hit
GGGATGTGAAGGTGCA29130.1690156535300947No Hit
AGTCCTGCTCCTAGTA28270.16402583334348703No Hit
GCAAATCTGGAATTGA26890.15601891257893055No Hit
TGCAATGACACCTTGA25660.14888230928878235No Hit
TTGCGTCACCACTCAA25620.14865022462894015No Hit
TGTCAATCTGGTGTCC25340.14702563201004462No Hit
GTTGTTGGATTCCATT24940.14470478541162246No Hit
CCTTTCTACTCGGGCT23460.1361176529974604No Hit
TACGCCTTGCTGATCA22720.1318240867903794No Hit
GGTTGAACTTCTTTGT22430.13014147300652332No Hit
TTGTTTGTGGCGCTGT22070.12805271106794336No Hit
TACAACCGATCGCTAA21840.1267182242738506No Hit
CAAGTGGGATAGCGAG21540.12497758932503399No Hit
TTCCACTCTCGAATCT21330.12375914486086234No Hit
TAAGGGCGATTTCTTG20850.12097412894275573No Hit
CCCACCTCTCATGATC20420.11847921884945191No Hit
AGAACGCGAGGAGTCA20170.11702868972543803No Hit
CCTTTCTACTCATTTC20120.11673858390063528No Hit
CTGCCATTGTCTTTGT19680.11418565264237088No Hit
TCTTTCCACTTCGCAA19670.11412763147741034No Hit
AATCCAGACTACCAAC19670.11412763147741034No Hit
GTGGTAACTTTTCCGC19600.11372148332268646No Hit
GCTCCTAACGAATAGT19060.11058834041481652No Hit
CGGAATTTGAGAGGCT18740.10873166313607877No Hit
GCGACGTTGAGTGGTG18210.1056565413931694No Hit
GAGAGGTTGATGTGGG17900.10385788527939221No Hit
TATTGCTTGTTCGTTT17450.10124693285616726No Hit
GTACTCAGATGAACAA17440.10118891169120672No Hit
AGCACATTGCTGGAAG17310.10043463654671951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)