FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3606339
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT638081.7693289510498045No Hit
GAAGCAGTGGAACCTT225430.6250937585179873No Hit
GTTCTTCCTAACGTAA185020.5130410646364637No Hit
GATACGTACCGCTCGA165230.4581654691918869No Hit
CGCTTAAGATAATAGG148010.41041621433814185No Hit
TGTCCCATGAGACAAT146170.4053140872225268No Hit
CATGGAGGATCGACAT144260.40001785744490465No Hit
AAAGCATGATCTTTGT133250.3694882816063603No Hit
TGAGCGCACAGGACAC127940.35476420824553656No Hit
TGTCGAAACTTCGCAA122990.34103837714646346No Hit
TAATTGCCTGTCTGGC118200.32775620927483523No Hit
GGGGGGGGGGGGGGGG116460.3229313716763732No Hit
GGAAGGACTAGGTAAT106980.29664432545026964No Hit
AATGATGGAAAGCTAA95610.2651165073499746No Hit
CATGTCAGAGGTTTGT93120.25821199837286507No Hit
TCGACCTTGTTTCGCC88020.24407023299806258No Hit
GTGAGATCTCGATTAC78380.21733952354451425No Hit
ATGGGTACTTGGCTGC72190.20017530243274412No Hit
AAACGACCTAGGGAGG69850.19368672773136414No Hit
AGCCTACCTTAACTCG68180.1890559927949092No Hit
CAGCTCACTGTTTACG67120.18611672391308748No Hit
TTGCGATGACATTCAG66350.18398159463100947No Hit
GCTATGATGACCTGCG65170.18070957832860415No Hit
TGTTCCTCTTTATGGC64780.1796281492117075No Hit
CCTGTTGACCCTAGTA61720.17114308998682598No Hit
CTGCCTTGACCATAAC60730.16839792376701135No Hit
CAATGTGACCAACGCC60370.1673996815052606No Hit
TAACCAGACATCACAC58890.16329579665139632No Hit
CATGCAAACGAAGGCT58620.16254711495508326No Hit
AGCTTGTGACTCACTC58470.16213118067935375No Hit
CACAGCTCTGGACTGA58020.16088337785216533No Hit
ATGGGTACTTTCGGGC56750.15736180098432231No Hit
ATGCCGCGATGCCACG56660.15711224041888464No Hit
CTATTCAACCGAACGA56410.15641901662600216No Hit
CATGATGTGTCATGTG56320.15616945606056448No Hit
AGAACGCGAGGAATAT55300.15334110298560397No Hit
TGGGCCATGCGTTCTC54780.1518991974964084No Hit
TTGTTTGTGATACGCT54280.15051274991064345No Hit
CATTAGTCTATTCTGG52650.1459929307810497No Hit
ATTAGCGTGGTCGGTC52240.14485604376072242No Hit
GGGTCGTACCGCTCGA51910.1439409883541176No Hit
GGGCTGACTAATACAG51160.14186131697547014No Hit
CCGCTATTGTTCGCAA50280.13942116922452383No Hit
CACTATACTACGCCAC49200.13642644243927152No Hit
AGCTCGGACCTTAAGC49040.13598277921182672No Hit
AACCAACACCGGAATG47760.13243347339226844No Hit
AACGTCCCTTACAGAA47720.13232255758540726No Hit
TTGACGTGACCTCAAA47650.13212845492340017No Hit
GGTAGCCTGTGCCACG47360.1313243153236565No Hit
TTGTAACCTCATCCTC47320.13121339951679528No Hit
ATAGGAAACAGACTTC47020.1303815309653363No Hit
CCCAATGCTGGAATGC46950.13018742830332922No Hit
CTGCCATTGCACAGTT46490.12891189652442547No Hit
CTGATTACTGCTTTGA45910.1273036173249381No Hit
CCTACGGGATGGAACG45670.12663812248377093No Hit
ATAGCCAACATGGCCC45470.12608354344946496No Hit
CGCTTACTGGCCACGT44540.12350475093994215No Hit
TGGAGTTACAAGTCTC44470.12331064827793504No Hit
CGATCAAACCGATCGC44460.12328291932621974No Hit
GGCTTGCGAGTACGTT44450.12325519037450444No Hit
GCAGATACTCGGCTCA43550.12075958472012754No Hit
TGTTTGTTGCGCTCGA43370.12026046358925215No Hit
CGCTGAGTGTTAGCTG43330.12014954778239095No Hit
ATCTTACTGCGCACTG42520.11790350269345173No Hit
TCAGGCTCTTAAAGCA42130.11682207357655507No Hit
CGCTTCCCTGCGCTGT41910.11621203663881848No Hit
CGAGTCTCTTACTTTC41650.1154910838942207No Hit
GATACCATGTCTGGAT41570.11526925228049832No Hit
TGGGTGCACTTCTGAG41470.1149919627633453No Hit
CATGTTACTAACGTGG41460.11496423381163001No Hit
TTCTAACACTACGTTG41390.11477013114962294No Hit
CTCGGATCTTTCTGAG40780.11307866509498968No Hit
TCCAAAGTGAAGGCCA40470.11221906759181541No Hit
GTAAGAAACGACAAAT40340.11185859121951652No Hit
CCTCCCTTGTTTCGCC40260.11163675960579414No Hit
AGTGGTACTCAACGCC39590.1097789198408691No Hit
GCGTCGATGCTTGAAC39440.10936298556513961No Hit
TACAACCGATTCCATT39350.1091134249997019No Hit
CTTAGGCCTTATGACC39220.10875294862740302No Hit
GCGACGTTGCTTAGTG39070.10833701435167353No Hit
AGCCGGTACGCGCAAA39020.10819836959309705No Hit
TACGCCTTGGGTTGAG38960.10803199588280525No Hit
CCTTCAGTGTAGCTTG38900.10786562217251344No Hit
ATTGAGAGATGATCAC38750.10744968789678398No Hit
GTCCTGACTTTACGAC38520.10681192200733208No Hit
ATCGCAATGTAACTCG38430.1065623614418944No Hit
TATCTCCCTGGAATTA38310.10622961402131081No Hit
AACAGCTACTCGAGAG38290.10617415611788021No Hit
ACCTGCTTGCCAAACT38170.10584140869729664No Hit
GAAAGTAACCCTGCGA37920.10514818490441413No Hit
AGAACAATGAGTCGGA37780.10475997958039995No Hit
TGGTCCTTGTTTCTGT37730.10462133482182347No Hit
AACCACTGAAAACATG37300.10342898989806561No Hit
TGAGATAGACTCATCC37080.10281895296032902No Hit
AGAACATGAAAGCTAA36990.10256939239489132No Hit
TTCACGCTGTGGGCAA36510.10123840271255696No Hit
ACCTCCATGGAATTGA36380.10087792634025808No Hit
CCTTCTTTGGATCATC36270.1005729078713898No Hit
GTTGCTAGACGCTCGA36180.1003233473059521No Hit
CATGTCAGAACAGGTG36160.10026788940252152No Hit
GGTCAGAGAACCAGTT36080.1000460577887991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)