FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004950220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16203524
Sequences flagged as poor quality0
Sequence length34
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG19050.08.8928495
TCTATAC12700.08.7088443
TACACTG27250.08.5288835
TAGACAG25850.08.34085755
GTCCTAC14050.08.1747761
TAGACTG19350.08.1037795
GTACTAG10800.07.6518521
GTCCTAG21650.07.634181
CCTACAC23700.07.6204133
GTGTAGG26350.07.60140231
CTAGGAC24700.07.5386193
GTATAGA13950.07.5305271
GTGTATA27950.07.4669421
CTATACT15600.07.44901234
TAGTACC10950.07.41581774
TAGGACT23600.07.4155474
GTGTTAG24300.07.3780571
TTATACG3803.0926458E-87.36871244
GTCTTAG18650.07.3601311
TAATACT19600.07.35743334