FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3615586
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC349890996.7729435836957No Hit
AGGCTACA212620.5880651158622696No Hit
AGGCTCCC155520.4301377425402134No Hit
AGGCAACC107520.2973791800278019No Hit
CGGCTACC97910.27079980949146276No Hit
ACGCTACC68040.18818526236134336No Hit
AGGATACC53960.14924275069103599No Hit
AGCCTACC48430.1339478579682519No Hit
AGTCTACC48330.13367127762968437No Hit
AGGCTAAC45840.12678442719935304No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)