FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2981995
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA291423297.72759511669202No Hit
CGTGCAAA124240.416633830707295No Hit
AGTGCTAA73990.24812248176137117No Hit
CGAGCTAA55570.18635175444626836No Hit
CGTGGTAA50270.16857841813953411No Hit
CGTCCTAA39930.13390364504299973No Hit
CGTGATAA36020.12079161769218258No Hit
CGTGCTTA34580.11596263575223968No Hit
CCTGCTAA31980.10724364058289837No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)