FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3043380
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA113740.37372920897160394No Hit
GTCGACCGATGCTCAA107080.3518456453022626No Hit
CATTCAACTAGGCATG101570.33374077505930905No Hit
GGGGGGGGGGGGGGGG84580.2779146869598933No Hit
ACTGGGCACTTCTCGC81300.26713719614376125No Hit
TGTAAGCTGTTGTGAC79300.26056555540221726No Hit
GCTTTAGGAACTAGTC72760.2390762901773686No Hit
CATCAGTGATTCGCAA46150.15164061011112645No Hit
TAGTTGCGACATAGCT45590.14980055070349413No Hit
CAGGAGCCTCGTGCAC36790.1208853314407008No Hit
CAGGAGCCTTCCAATG34480.11329508638421755No Hit
TCCTTAAACAGGGAGG31550.10366763269785567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)