FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2456518
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG236531496.28726514521775No Hit
CATCAGTA98380.4004855653408605No Hit
CAGCAGTG74230.3021756811877625No Hit
CCTCAGTG74080.30156506078929607No Hit
CAACAGTG67030.272865902061373No Hit
CATAAGTG66960.27258094587542203No Hit
CATCAGGG63410.25812959644504946No Hit
CATCACTG60620.24677205703357352No Hit
CTTCAGTG51770.21074545352405316No Hit
CATCAGTC43800.1783011563522026No Hit
AATCAGTG43470.17695779147557641No Hit
CATCAGAG42810.17427106172232404No Hit
CATGAGTG37780.15379492436041584No Hit
CATCAGTT33780.1375117137346439No Hit
CATCATTG28940.11780902887745988No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)