FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4386672
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG427316197.41236636794362No Hit
ATTGGCCG315720.7197255687227128No Hit
ATTGGACC117970.2689282444641405No Hit
ATTGGACA92190.21015931895523532No Hit
AATGGACG75060.1711092144568821No Hit
ATAGGACG74380.1695590643658792No Hit
ATTGCACG69690.15886758800293252No Hit
ATTGGAAG49280.11234028894797697No Hit
ATTCGACG49110.11195275142522622No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)