FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4386672
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA176550.4024691155390693No Hit
GTCGACCGATGCTCAA154570.35236279347988636No Hit
CATTCAACTAGGCATG154100.3512913662111049No Hit
GGGGGGGGGGGGGGGG128850.2937306459201873No Hit
ACTGGGCACTTCTCGC125080.2851364314450682No Hit
TGTAAGCTGTTGTGAC121870.2778188111625396No Hit
GCTTTAGGAACTAGTC95340.2173401612885577No Hit
TAGTTGCGACATAGCT72720.1657748744378426No Hit
CATCAGTGATTCGCAA70290.16023536749499392No Hit
CAGGAGCCTCGTGCAC58410.13315333355217804No Hit
NNNNNNNNNNNNNNNN54840.12501504557441268No Hit
CAGGAGCCTTCCAATG51890.11829012973844409No Hit
TCCTTAAACAGGGAGG50140.11430077288659832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)