FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4395814
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGTCC425086996.7026584837302No Hit
CCCAGTCC398420.9063622801146728No Hit
ACCAGTCA291910.6640635841279908No Hit
ACCAGACC107400.24432334944108192No Hit
ACCACTCC98950.22510051608189063No Hit
ACAAGTCC94430.21481800640336465No Hit
ACCAGTAC55940.127257431729368No Hit
ACCCGTCC45180.10277959895482384TruSeq Adapter, Index 16 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)