FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3588302
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAACAA352617998.26873546318008No Hit
GCCAAAAA94260.2626869198857844No Hit
CCCAACAA67600.18838994042307475RNA PCR Primer, Index 36 (100% over 8bp)
GACAACAA48570.1353565000939163No Hit
GCAAACAA43140.12022399452442965No Hit
GCCCACAA40780.11364706761025131No Hit
ACCAACAA37770.1052586989612357No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)