FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3262961
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG320982798.37160174455043No Hit
AGCACGAG56370.17275719813997165No Hit
AGCTCGAA51360.1574030458837847No Hit
AGCTCAAG46390.1421714816695633No Hit
AGCTCCAG36270.11115670705227554No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)