FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3757004
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG366283797.49356135899777No Hit
CCGTTATA140660.3743940650582219No Hit
CCGGTATG114000.30343326757171407No Hit
ACGTTATG100010.26619614991093965No Hit
CCGATATG77650.20668064234161052No Hit
CCGTTTTG62380.1660365546589783No Hit
CCGTTAAG59160.15746589569774214No Hit
CCCTTATG44070.11730091317443365No Hit
CCGTTATC43830.11666210629533533No Hit
CCGTAATG41720.11104592914992904No Hit
CCGTTATT40870.10878348811978907No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)