FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3169247
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT82200.2593676037241654No Hit
GGGGGGGGGGGGGGGG79430.2506273572239715No Hit
TCGCGGTGAGTCTTGA70010.22090420847601971No Hit
GTTAAGAGAGTACGTT65400.2063581664666717No Hit
TACCAGTGATACGATC54160.17089232868249146No Hit
ATCTTACTGGTTTGGT54090.1706714560272519No Hit
CGCTTACTGATCACAC53310.16821030358315398No Hit
TTGTGGTGAAAGACAT52860.16679040794232827No Hit
ATAGATGGAGAGTAAT50250.15855501322553908No Hit
ATTCCTAACTGCGTGC50190.1583656938067623No Hit
ATATGCCGAGAACAGC49970.15767152260458084No Hit
TGGAACACTTGAGGCA46150.1456181862757936No Hit
GCTATACGACAGGTGA44320.13984394400310232No Hit
CTTTCTGCTCTTGTGA43430.13703570595791364No Hit
CTTGACGCTCAGGGTA43320.13668862035682292No Hit
AGCTCTGCTGGCCTGT41610.13129301692168519No Hit
AGGTAGCGATTGACCA40820.12880031124112445No Hit
ACTGGAACTCTGGAAG39030.12315228191428437No Hit
TGTGACTGACCGTTAA38620.12185859921930982No Hit
TGTACCCTGCTGAGAG37110.11709406051342795No Hit
AGTTCACGACCAGAGA35830.11305524624619033No Hit
ACCCTTTCTAGGTGAC35260.11125671176781109No Hit
TTCCAAACTCCGCTAG34970.11034166791039007No Hit
ACATGTGTGTCAATGC34410.10857468666847361No Hit
CACAGCTCTCTCTGGG34310.10825915430384568No Hit
GCGGTTCGAAGCAAGC33540.10582955509621055No Hit
TCAGTCCACCCAGCAC33050.10428344650953364No Hit
ACACTCCACCGTACAT32870.10371548825320336No Hit
CAGTGGAGAGATCATC32360.10210627319360088No Hit
TCCCAGACTCCTAACA31910.10068637755277515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)