FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3169247
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT304351296.03265381335062No Hit
GCGCCCCT381321.203188012799255No Hit
GCGCACCA236880.7474330653306606No Hit
GCGCACAT70490.22241876382623377No Hit
GCGCACCG64460.20339216223916912No Hit
CCGCACCT57050.18001121402023887No Hit
GCCCACCT51880.16369819076897446No Hit
GCGAACCT48360.15259145153407103No Hit
GCGCAACT43460.13713036566730202No Hit
GCGCACGT32290.10188540053836133No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)