FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences854318
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA35340.4136632963369612No Hit
GTCGACCGATGCTCAA31830.3725778925411849No Hit
CATTCAACTAGGCATG30820.3607555968620584No Hit
GGGGGGGGGGGGGGGG29480.34507057091153415No Hit
ACTGGGCACTTCTCGC25400.29731317846516164No Hit
TGTAAGCTGTTGTGAC24600.28794898386783374No Hit
GCTTTAGGAACTAGTC19940.2334025503383986No Hit
TAGTTGCGACATAGCT14160.1657462443727043No Hit
CATCAGTGATTCGCAA13460.15755257410004236No Hit
CAGGAGCCTCGTGCAC12110.1417504957170515No Hit
CAGGAGCCTTCCAATG10180.11915937625099787No Hit
TCCTTAAACAGGGAGG9120.10675181840953836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)