FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8971489
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC872952697.3029783573273No Hit
CAACCATA418390.4663551390410221No Hit
AAACCATC377420.42068824918583747No Hit
CCACCATC335350.37379525293961796No Hit
CAACCAAC275840.30746289718462566No Hit
CAAACATC164080.18289048785547193No Hit
CAACAATC153390.1709749630189593RNA PCR Primer, Index 36 (100% over 8bp)
CAACCCTC101300.11291325219258475No Hit
CACCCATC97220.10836551212401865No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)