FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3321741
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG326129098.18014107662218No Hit
TTAGATTA101330.3050508754294811No Hit
ATAGATTG58160.1750889066907986No Hit
TTAGAATG54510.16410069297997648No Hit
TAAGATTG44270.1332734851994782No Hit
TTAGATAG40270.1212316071602211No Hit
TTAGATTT39850.1199672099660991No Hit
TTAGATTC38630.11629443716412569No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)