FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004950302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17227410
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG1682346697.6552250164128No Hit
CCGTTATA644460.37408989511481994No Hit
CCGGTATG599510.34799775474084615No Hit
CCGTTTTG457060.2653097592731583No Hit
CCGATATG304960.17702022532696443No Hit
CCGTAATG253870.14736399725785826No Hit
CCGTTAAG199430.11576319365476297No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)