FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11670416
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTCAGG1142889697.93049365164018No Hit
CGCTCCGG315610.270435946756311No Hit
CGCTCAGA266050.227969594228689No Hit
CGCGCAGG240350.20594809987921595No Hit
CGCACAGG183440.15718377134114156No Hit
CGCTCTGG138140.11836767429712874No Hit
CGCTGAGG131090.11232675853200091No Hit
CGGTCAGG117970.10108465713647226No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)