FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3488284
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT550771.5789138728383354No Hit
AAATAGGTGTTGCGTA295740.8478094100136342No Hit
GGCTTGCGACGACATT272330.7806990485866403No Hit
TATCACTACTGGTCCG257630.738557984384299No Hit
ATGGGTTACCATGCGC254270.7289257411380495No Hit
GTGTTGTGAGGGTAGT169840.4868869621854184No Hit
CTAATCTTGCCACTTC163200.46785181481783017No Hit
CTGCTTTCTCCACTTC149890.42969551791081234No Hit
AGAGAATTGCCTCCTA142420.40828097712227557No Hit
GGGGGGGGGGGGGGGG119180.3416579613357169No Hit
CTGGCCAGAGGAATGC107750.3088911338641005No Hit
AGCCGAGCTGCCCTTT106780.3061103969745583No Hit
AATGGTGCTTCGTACA98440.2822017932026177No Hit
TCCCTGTGACCCGCAA82090.23533060954899315No Hit
GCTCCTAACCTATCTT76280.21867485560235345No Hit
TGCCGTTACAATCTGC72060.206577216763314No Hit
CTTAATCTGGGAATTA71450.20482850593586988No Hit
GAGAGAAGACTCACGG69880.20032772560949738No Hit
TTGTCAACTAATACAG69310.19869368434450863No Hit
TCTTTCCACCGAGTGA66040.18931944761378375No Hit
GCTGTTCTGATAGGTA65580.1880007476455472No Hit
GTAATCGTGATCCTCC64980.18628070420871695No Hit
TAGCGCGACAAGACAT64450.18476133250618357No Hit
GGGATGTGAAGGTGCA62460.17905652177402986No Hit
AGTCCTGCTCCTAGTA60280.17280703062021327No Hit
TCGTATACTTTCTGGA60060.17217634802670884No Hit
TGCAATGACACCTTGA53970.15471790714288172No Hit
GTTGTTGGATTCCATT51980.14901309641072802No Hit
GCAAATCTGGAATTGA51710.1482390768641544No Hit
TTGCGTCACCACTCAA51160.14666237038039334No Hit
TGTCAATCTGGTGTCC50850.1457736812713644No Hit
TACGCCTTGCTGATCA48430.13883617274281565No Hit
CCTTTCTACTCGGGCT47720.1368007880092332No Hit
CAAGTGGGATAGCGAG47150.13516674674424445No Hit
TTGTTTGTGGCGCTGT46880.1343927271976708No Hit
TACAACCGATCGCTAA46640.13370470982293875No Hit
GGTTGAACTTCTTTGT46040.13198466638610848No Hit
TAAGGGCGATTTCTTG43550.12484648612326289No Hit
AATCCAGACTACCAAC43550.12484648612326289No Hit
AGAACGCGAGGAGTCA42920.12304044051459112No Hit
CCCACCTCTCATGATC42800.12269643182722506No Hit
CCTTTCTACTCATTTC42600.12212308401494831No Hit
TTCCACTCTCGAATCT42410.12157840359328541No Hit
CTGCCATTGTCTTTGT41970.12031703840627654No Hit
GAGGTGCCTTCGTACA41370.11859699496944628No Hit
GTGGTAACTTTTCCGC40430.11590226025174556No Hit
TCTTTCCACTTCGCAA39940.11449755811166751No Hit
CGGAATTTGAGAGGCT39570.11343686465895553No Hit
GCTCCTAACGAATAGT38370.10999677778529501No Hit
GAGAGGTTGATGTGGG37340.10704403655206972No Hit
AGCACATTGCTGGAAG36950.10592600831813007No Hit
TATTGCTTGTTCGTTT36900.10578267136506087No Hit
ATGTGTGTGCCTTTGC36530.10472197791234888No Hit
CGTTTGCTGGCTAATC36200.10377595402209223No Hit
CTTAGAGACGCTCTTC35520.10182657146035129No Hit
CTAATCACTGCTCAGC35320.10125322364807451No Hit
CCAGCTTTGGGAATGC35290.10116722147623303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)