FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3336225
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA130530.3912505901130769No Hit
GTCGACCGATGCTCAA118480.3551319230567483No Hit
CATTCAACTAGGCATG116090.34796813764059675No Hit
NNNNNNNNNNNNNNNN95500.28625167667048834No Hit
ACTGGGCACTTCTCGC94370.28286461494653387No Hit
GGGGGGGGGGGGGGGG92010.27579075152305377No Hit
TGTAAGCTGTTGTGAC91050.2729132477575703No Hit
GCTTTAGGAACTAGTC76530.22939100330463322No Hit
TAGTTGCGACATAGCT53380.16000119895990228No Hit
CATCAGTGATTCGCAA52300.1567640072237334No Hit
CAGGAGCCTCGTGCAC46450.13922921865281868No Hit
CAGGAGCCTTCCAATG38580.11563968257536586No Hit
TCCTTAAACAGGGAGG36870.11051412899309848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)