FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3378409
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA129530.3834053248141359No Hit
GTCGACCGATGCTCAA122400.3623007161063092No Hit
CATTCAACTAGGCATG122360.3621823171794771No Hit
ACTGGGCACTTCTCGC96920.2868805997142442No Hit
GGGGGGGGGGGGGGGG96580.2858742088361711No Hit
NNNNNNNNNNNNNNNN96090.2844238219824775No Hit
TGTAAGCTGTTGTGAC92350.27335352232367366No Hit
GCTTTAGGAACTAGTC80400.23798184293257565No Hit
TAGTTGCGACATAGCT56620.16759368093087604No Hit
CATCAGTGATTCGCAA52910.15661218046719624No Hit
CAGGAGCCTCGTGCAC47900.14178271488147232No Hit
CAGGAGCCTTCCAATG40340.11940531771020028No Hit
TCCTTAAACAGGGAGG38410.11369256949055014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)