FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004950322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences875479
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA83933095.87094607637647No Hit
TCCTGCGA112711.2874095209593834No Hit
TCATGCGC46050.5259977680789601No Hit
TCATGCAA22560.25768750592532774No Hit
TCAAGCGA22330.2550603726645642No Hit
ACATGCGA18770.21439691871535468No Hit
TCATGCCA17400.19874834233602404No Hit
TCATCCGA16190.18492733692070285No Hit
TAATGCGA15050.17190589380213575No Hit
TCATGAGA14810.1691645373561216No Hit
TCTTGCGA9090.10382887539278497No Hit
TCATGCTA8950.10222975079927674No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)