FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4379595
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAACAA431333798.4871203844191No Hit
CCCAACAA106400.24294483850675688RNA PCR Primer, Index 36 (100% over 8bp)
ACCAACAA74560.1702440522468402No Hit
GCCAAAAA70410.1607682902186161No Hit
GACAACAA62240.14211359726184727No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)