FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2737777
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT78930.288299594890307No Hit
NNNNNNNNNNNNNNNN78660.2873133933114348No Hit
TCGCGGTGAGTCTTGA73140.2671510499211587No Hit
GGGGGGGGGGGGGGGG66970.24461451754470873No Hit
GTTAAGAGAGTACGTT51270.18726872203251033No Hit
CGCTTACTGATCACAC49070.17923300546392198No Hit
TACCAGTGATACGATC44550.1627232605139133No Hit
TTGTGGTGAAAGACAT43520.15896108412043786No Hit
ATCTTACTGGTTTGGT42540.15538153764897578No Hit
ATAGATGGAGAGTAAT42260.15435881008570093No Hit
ATTCCTAACTGCGTGC41560.15180199117751372No Hit
ATATGCCGAGAACAGC39830.14548299587585112No Hit
TGGAACACTTGAGGCA37780.13799516907330292No Hit
GCGGTTCGAAGCAAGC35660.130251660379936No Hit
AGGTAGCGATTGACCA35440.12944808872307714No Hit
CTTTCTGCTCTTGTGA34970.12773136745615146No Hit
CTTGACGCTCAGGGTA34830.12722000367451403No Hit
AGCTCTGCTGGCCTGT34250.12510149657915892No Hit
GCTATACGACAGGTGA34000.12418834696909208No Hit
TGTGACTGACCGTTAA31990.11684662410415458No Hit
ACGCTCTTGCCTCAAA31570.11531253275924226No Hit
AGTTCACGACCAGAGA31500.11505685086842354No Hit
ACCCTTTCTAGGTGAC30700.11213477211620962No Hit
TTCCAAACTCCGCTAG30430.1111485705373374No Hit
TGTACCCTGCTGAGAG30300.11067373274010264No Hit
ACTGGAACTCTGGAAG30240.1104545768336866No Hit
TCAGTCCACCCAGCAC29730.10859175162915022No Hit
TCCCAGACTCCTAACA28430.10384337365680259No Hit
ACATGTGTGTCAATGC28400.10373379570359456No Hit
ACACTCCACCGTACAT28020.10234580829629293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)