FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1469299
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT270501.8410139801361056No Hit
AAATAGGTGTTGCGTA115530.7862933276344707No Hit
GGCTTGCGACGACATT108670.7396043963822204No Hit
TATCACTACTGGTCCG104990.7145584390923835No Hit
ATGGGTTACCATGCGC101040.687674870805738No Hit
GTGTTGTGAGGGTAGT67440.4589943912028797No Hit
CTAATCTTGCCACTTC65040.44266007123124707No Hit
CTGCTTTCTCCACTTC59050.4018923309687137No Hit
AGAGAATTGCCTCCTA54750.37262667435287167No Hit
GGGGGGGGGGGGGGGG49670.3380523637462491No Hit
AGCCGAGCTGCCCTTT42100.2865311961690575No Hit
CTGGCCAGAGGAATGC41460.2821753775099554No Hit
AATGGTGCTTCGTACA38070.2591031505500242No Hit
TCCCTGTGACCCGCAA33470.2277957039377281No Hit
GAGAGAAGACTCACGG30550.207922281305575No Hit
TGCCGTTACAATCTGC28980.1972369136574652No Hit
CTTAATCTGGGAATTA27310.1858709493438708No Hit
TCTTTCCACCGAGTGA27190.18505423334528914No Hit
TTGTCAACTAATACAG27170.18491811401219221No Hit
GCTGTTCTGATAGGTA26040.17722737169221514No Hit
TAGCGCGACAAGACAT25160.17123812103594982No Hit
GGGATGTGAAGGTGCA25130.17103394203630437No Hit
GTAATCGTGATCCTCC24980.17001304703807735No Hit
TCGTATACTTTCTGGA23710.1613694693864217No Hit
GCTCCTAACCTATCTT23660.16102917105367934No Hit
AGTCCTGCTCCTAGTA23370.1590554407237737No Hit
GCAAATCTGGAATTGA21650.14734917807743694No Hit
GTTGTTGGATTCCATT20900.14224470308630172No Hit
TTGCGTCACCACTCAA20540.1397945550905568No Hit
TGCAATGACACCTTGA20500.1395223164243629No Hit
TACGCCTTGCTGATCA19430.13223993210367666No Hit
TGTCAATCTGGTGTCC19180.1305384404399649No Hit
CCTTTCTACTCGGGCT18880.1284966504435108No Hit
TACAACCGATCGCTAA18780.12781605377802613No Hit
TTGTTTGTGGCGCTGT18430.12543396544882968No Hit
GGTTGAACTTCTTTGT18290.1244811301171511No Hit
CAAGTGGGATAGCGAG17560.11951277445911282No Hit
TAAGGGCGATTTCTTG17260.11747098446265873No Hit
CCTTTCTACTCATTTC17010.115769492798947No Hit
AATCCAGACTACCAAC16960.11542919446620463No Hit
CCCACCTCTCATGATC16900.11502083646691381No Hit
TTCCACTCTCGAATCT16810.11440829946797759No Hit
CTGCCATTGTCTTTGT16740.11393188180213829No Hit
AGAACGCGAGGAGTCA16710.11372770280249289No Hit
GTGGTAACTTTTCCGC16710.11372770280249289No Hit
GAGGTGCCTTCGTACA16440.11189009180568421No Hit
CGGAATTTGAGAGGCT15920.10835098914516378No Hit
TCTTTCCACTTCGCAA15310.10419934948570712No Hit
GAGAGGTTGATGTGGG15270.10392711081951325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)