FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004950345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18088002
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC1755375397.04639019832041No Hit
CAACCATA1139460.6299534907172168No Hit
CAACCAAC807320.4463290085881238No Hit
CACCCATC619760.3426359638836838No Hit
CAACCCTC506970.28027971248565764No Hit
AAACCATC379570.2098462837410124No Hit
CAACAATC336710.18615101878029425RNA PCR Primer, Index 36 (100% over 8bp)
CCACCATC294510.16282063657445414No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)