FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004950360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18406450
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC1790992797.30245104297678No Hit
CAACCATA1115770.6061842451966566No Hit
CAACCAAC808320.43915040651510745No Hit
CACCCATC555600.3018507099413521No Hit
CAACCCTC422810.22970752100486516No Hit
AAACCATC356900.19389942112683325No Hit
CAACAATC309560.16818017597092322RNA PCR Primer, Index 36 (100% over 8bp)
CCACCATC238760.12971539867818074No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)