FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004950364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3307452
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG320299996.84188916422673No Hit
CTATTTGA235690.712602934222477No Hit
CGATTTGG80180.24242226342211468No Hit
CTTTTTGG80000.24187803783698147No Hit
CTAATTGG61200.18503669894529082No Hit
CTATATGG59090.17865716569734044No Hit
CTATTTGC58630.1772663669797778No Hit
CTATTTTG58340.17638955909261872No Hit
CTAGTTGG55000.16629115101292474No Hit
CAATTTGG52790.15960927021767815No Hit
GTATTTGG52390.15839988002849323No Hit
CTATTTCG48310.1460641000988072No Hit
CTATTAGG45280.13690296941573152No Hit
ATATTTGG43790.13239799096101773No Hit
CTATTTGT36380.10999403770636733No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)