FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3307452
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT94030.2842973987226421No Hit
TCGCGGTGAGTCTTGA90490.2735942955483556No Hit
GGGGGGGGGGGGGGGG82590.24970883931195376No Hit
GTTAAGAGAGTACGTT64180.1940466558547184No Hit
CGCTTACTGATCACAC56330.17031237339196456No Hit
TACCAGTGATACGATC52740.15945809644403003No Hit
ATCTTACTGGTTTGGT52140.15764401116025267No Hit
TTGTGGTGAAAGACAT52020.1572811941034972No Hit
ATAGATGGAGAGTAAT50500.15268551138459455No Hit
ATTCCTAACTGCGTGC49270.14896663655285095No Hit
ATATGCCGAGAACAGC47520.14367555447516697No Hit
GCGGTTCGAAGCAAGC45140.13647968284951678No Hit
TGGAACACTTGAGGCA44440.1343632500184432No Hit
CTTGACGCTCAGGGTA42570.12870935088400376No Hit
AGGTAGCGATTGACCA41840.1265022137887413No Hit
GCTATACGACAGGTGA41700.1260789272225266No Hit
CTTTCTGCTCTTGTGA41500.12547423212793413No Hit
AGCTCTGCTGGCCTGT41140.12438578095766771No Hit
ACTGGAACTCTGGAAG39270.11873188182322826No Hit
TGTGACTGACCGTTAA38080.11513394601040318No Hit
ACGCTCTTGCCTCAAA37680.11392455582121827No Hit
AGTTCACGACCAGAGA35790.10821018717731958No Hit
ACCCTTTCTAGGTGAC35390.10700079698813467No Hit
TGTACCCTGCTGAGAG35170.10633563238408297No Hit
TTCCAAACTCCGCTAG34900.10551929400638316No Hit
ACACTCCACCGTACAT34160.10328192215639108No Hit
GGGAGCTCTTGATGAA34040.1029191050996356No Hit
ACATGTGTGTCAATGC33760.10207253196720617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)