FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004950372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4565794
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA194470.4259281080136335No Hit
CATTCAACTAGGCATG169440.37110741308083545No Hit
GTCGACCGATGCTCAA146760.32143368710896725No Hit
ACTGGGCACTTCTCGC139340.3051824063897758No Hit
GGGGGGGGGGGGGGGG137180.30045157534483596No Hit
TGTAAGCTGTTGTGAC130150.2850544724532031No Hit
GCTTTAGGAACTAGTC92800.20325051896778523No Hit
TAGTTGCGACATAGCT78310.1715145273746472No Hit
CATCAGTGATTCGCAA73890.1618338453289833No Hit
CAGGAGCCTCGTGCAC63820.1397785357815092No Hit
CAGGAGCCTTCCAATG57580.12611169054057192No Hit
TCCTTAAACAGGGAGG53110.11632149851701588No Hit
NNNNNNNNNNNNNNNN48990.10729787633870472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)