FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3966844
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT386651197.47070971280948No Hit
AAGTTGAA176010.4437028529480867No Hit
AAGTTGCT96100.24225807720192677No Hit
AACTTGAT89640.22597309095089194No Hit
AAGTTCAT85630.2158642991758688No Hit
AATTTGAT74570.187983192684159No Hit
AAGTAGAT71860.18115156532497875No Hit
AAGATGAT68460.17258051992969725No Hit
ATGTTGAT55720.14046430865443663No Hit
AAGTTTAT48930.12334742682091861No Hit
AAGTTGAG47240.11908711308032278No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)