FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004950381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004950381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4121903
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC402317597.60479564899998No Hit
TAAGCCCC194340.4714812551387066No Hit
AAAGCCAC154740.3754091253481705No Hit
TAACCCAC104580.2537177609468248No Hit
TAAACCAC94610.2295299040273388No Hit
TAAGCCAA88580.2149007388092345No Hit
TAAGCAAC54210.13151692312992325No Hit
TAATCCAC48130.11676645471763891No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)