FastQCFastQC Report
Mon 4 Jul 2022
EGAF00004952147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004952147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114776704
Sequences flagged as poor quality0
Sequence length35-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC3651310.3181229180444143No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC2806670.24453307179826317No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA2592650.22588643075166195No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC2463400.21462543479206375No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA2418450.21070913484325182No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG2386390.20791588509110698No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA2385630.20784966956360762No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT2111840.1839955257819566No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC1992170.17356919397162685No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT1986060.17303685598080948No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1963700.1710887254612225No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT1840840.16038446268678355No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT1759400.1532889461610607No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA1733090.1509966691498651No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG1640640.14294189873234206No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG1630330.14204363282639654No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG1609470.14022619084792676No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT1464830.12762433045646615No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC1426590.12429264391491848No Hit
CAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAA1418460.12358431202206328No Hit
CTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCT1319500.11496235333609162No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG1296110.11292448335160417No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA1253240.10918940484647478No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT1200090.10455867420622221No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT1177260.10256959461041851No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA1148020.10002203931557399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)