FastQCFastQC Report
Tue 28 Jun 2022
EGAF00004952650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004952650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94831003
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4467330.4710832806439894No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA1148510.12111123616397898No Hit
GCCGACACGGCCGGACCCGCCGCCGGGTTGAATCCTCCGGGCGGACTGCG1012290.10674673555862316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)