FastQCFastQC Report
Thu 23 May 2024
EGAF00004952665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004952665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114497299
Total Bases16.5 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGATCTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5074280.4431790133320088No Hit
CGAGATCTCGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGC2266380.19794178725561026No Hit
CGAGATCTCGGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCAT1467630.12818031628850912No Hit
CGAGATCTCGACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCA1271530.11105327471524022No Hit
CGAGATCTCGCACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGG1191340.1040496160525149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)