FastQCFastQC Report
Fri 27 Jan 2023
EGAF00004952665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004952665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114497299
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGATCTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5074280.4431790133320088No Hit
CGAGATCTCGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGC2258390.19724395420017724No Hit
CGAGATCTCGGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCAT1467440.1281637220105952No Hit
CGAGATCTCGACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCA1270630.1109746702409111No Hit
CGAGATCTCGCACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGG1191240.10404088222203389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)