FastQCFastQC Report
Mon 6 Feb 2023
EGAF00004952675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004952675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114805883
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTACTA3669510.31962734871348014No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC3309700.28828662029453667No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTACTATTCGG2882250.2510542077360269No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG2827170.24625654418772253No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT2686110.2339697173880889No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT1764880.15372731378234336No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTACTATTCGGCG1749280.152368498398292No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC1708040.1487763479855819No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTACTATT1570480.13679438361185722No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG1456410.126858481633733No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT1444810.12584808045072046No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC1429800.12454065616132233No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT1337620.11651145089838298No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA1246980.10861638510284355No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT1194360.10403299628817801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)