FastQCFastQC Report
Sat 25 May 2024
EGAF00004952684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004952684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118854274
Total Bases16.5 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2441890.20545243497091234No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA1396100.11746317174929695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)