FastQCFastQC Report
Fri 27 Jan 2023
EGAF00004952687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004952687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117843847
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT2554320.21675463463103No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG2087510.17714204459058436No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG2007120.17032030531046732No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1992680.16909495495339694No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1853970.15732429373253573No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1572610.133448630542416No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG1526880.12956807155149985No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG1347940.11438357065855123No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC1307880.11098415685631852No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG1239130.10515016537095909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)