FastQCFastQC Report
Fri 1 Jul 2022
EGAF00004953144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004953144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36859447
Sequences flagged as poor quality0
Sequence length150
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC1343930.36460937680372685No Hit
GGAGGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCA612940.1662911546122762No Hit
CCACTGGAGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGACCCCGCCG598540.1623844220994417No Hit
GTCGACAACCACTGGAGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGA547110.14843141840950572No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA493400.13385984873837092No Hit
ACCACTGGAGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGACCCCGCC465830.12638008378150653No Hit
CACTGGAGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGACCCCGCCGG425370.1154032506239174No Hit
CCCACACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCC409650.11113840096407307No Hit
GGGGCGGGAACGACACACCACCGTTCGGCCTCGGGCACCTGAGGGACAAC406970.11041131463529552No Hit
ACCTGGACGGCGGGGGGGCGGACGAGGAGGCGGGGGAGGGGACCGGCGTC404040.1096164030892813No Hit
GAGGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCAC403600.10949703070694466No Hit
CTCGTCTCACTCAAACCGCCTCGAACCCCACACCGACGAGCTCCCTCAGG392730.10654799026149253No Hit
CCCGTCTCTCTCAGCCGGGCGCGCCCCCCTCTCCCCCCCGCCACCCGACG387290.10507211353442172No Hit
AACCACTGGAGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGACCCCGC379310.10290713260022594No Hit
CGGAGGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGC374250.10153435020335493No Hit
GTCGATTTGGCGAGGGCGCTCCCGACGACGCACCGGGAGGAGGCCCTTCC371920.10090221917870877No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)