FastQCFastQC Report
Thu 16 Jun 2022
EGAF00004953184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004953184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42498148
Sequences flagged as poor quality0
Sequence length150
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGGACCTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCG985950.23199834496317345No Hit
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC726290.17089921189036283No Hit
CTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGCGGGCGCG679550.15990108557201127No Hit
CCCGTCTCTCTCAGCCGGGCGCGCCCCCCTCTCCCCCCCGCCACCCGACG581660.1368671406575176No Hit
AGGGCACAGACGGGCGAGGGCCGGGGACCGCGAGGGCAAGGGCACCCGGG573600.1349705874241861No Hit
GGCACAGACGGGCGAGGGCCGGGGACCGCGAGGGCAAGGGCACCCGGGAG565920.13316344985197945No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA476940.11222606688649116No Hit
CCCACACACGACCGGTCGGAGGCAGAACGGCAGCCCCTCGGCGGCCGGCC470580.1107295310845075No Hit
GGGACCTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGC444730.10464691308430664No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)