FastQCFastQC Report
Sat 4 Jun 2022
EGAF00004953186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004953186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47460482
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGAATTACGATTCAAGGCGGCCACCGCGGCTCGTCCGCCGCGAGGGC3993640.8414663803877929No Hit
CCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCGTATTTAGCCTTGG3930360.8281331824653614No Hit
CCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCGTATTTAGCCTTGGA2760010.5815385524318948No Hit
TCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCGTATTTAGCCTTG1794630.37813143153497686No Hit
GTCGTCTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTACGATTCAAG1704220.3590818989153966No Hit
GCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGG1637040.3449269647113993No Hit
ATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGG1621280.34160630732743086No Hit
CCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCT1578250.3325398170208217No Hit
CTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTT1176430.24787569582626656No Hit
CCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTA1150110.24233002943375082No Hit
CCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCA1143450.24092675670676925No Hit
GGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCG1125080.2370561681189837No Hit
GGGAATTACGATTCAAGGCGGCCACCGCGGCTCGTCCGCCGCGAGGGCCA1108400.23354166525321002No Hit
CCCCTTGTCCGTACCAGTTCTGAGCTGAACGTTCGCTGCCCGGGGAAGGC1045590.22030749708778768No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCAC988900.20836282277959167No Hit
GGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGC928930.19572704718843775No Hit
CGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCG919250.19368745559726933No Hit
GTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTT900960.18983372313833644No Hit
TCCCCTTGTCCGTACCAGTTCTGAGCTGAACGTTCGCTGCCCGGGGAAGG879390.18528888939644564No Hit
CTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTACGATTCAAGGCGGC859430.18108328524771408No Hit
CCCTCTAAGAAGCTGGCCGCGGAGGATGACCTCCGCATAGCTAGTTAGCA812020.17109392188642333No Hit
GTCCCTCTAAGAAGCTGGCCGCGGAGGATGACCTCCGCATAGCTAGTTAG799160.1683842991733628No Hit
TCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGC792750.1670337018490457No Hit
CCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCGTATTTAGCCTTG775650.16343070430679568No Hit
GTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCC771860.1626321452024023No Hit
CCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGAC701600.14782825003757863No Hit
TTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCGTATTTAGCCTT687660.14489106958500758No Hit
GTGGGTTCTAGGTTAGCGTGCAGTTGGGCACCGTAACCCGGCTTCCGGTT687300.14481521700517075No Hit
CCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGG663410.13978155552655364No Hit
CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT655040.13801798304534707No Hit
TTCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGG643360.13555698823286286No Hit
CCCTTGTCCGTACCAGTTCTGAGCTGAACGTTCGCTGCCCGGGGAAGGCC642220.13531678839671285No Hit
GCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGC617200.13004503409805238No Hit
CGTCTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTACGATTCAAGGC584870.12323305102548263No Hit
CTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCGTATTTAGCCTTGGAC564760.11899584163515238No Hit
TTCCCCTTGTCCGTACCAGTTCTGAGCTGAACGTTCGCTGCCCGGGGAAG550550.1160017717477037No Hit
CCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAA540630.11391161176997738No Hit
CTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGC535230.11277382307242476No Hit
GTCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGG526630.11096178922076687No Hit
GGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTC522520.11009580560096292No Hit
GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCAC499870.10532341411956161No Hit
CTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCGT495730.10445110945143793No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)